STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
htrEFimbrial biogenesis outer membrane usher. (852 aa)    
Predicted Functional Partners:
fimC
Periplasmic chaperone.
 
 
 0.981
fimA
Type-1 fimbrial protein subunit precursor.
 
 
 0.956
papD
Pili assembly chaperone, PapD family.
 
 
 0.922
fimC-2
Pili assembly chaperone, required for type 1 fimbriae.
 
 
 0.922
fimA-2
Fimbrial protein.
 
 
 0.865
Rmet_2545
Putative fimbrial protein.
  
 
 0.768
yggG
Peptidase M48, Ste24p; Outer membrane autotransporter barrel (fragment).
  
    0.447
evgS
Hybrid sensory histidine kinase in two-component regulatory system.
 
  
 0.425
creC
Sensory histidine kinase in two-component regulatory system with CreB or PhoB, regulator of the CreBC regulon.
  
    0.408
polB
DNA polymerase II.
  
    0.401
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.