STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0598Ser/Thr protein phosphatase family protein. (296 aa)    
Predicted Functional Partners:
Rmet_0596
Putative transmembrane transcriptional regulator (Anti-sigma factor).
 
     0.877
Rmet_0599
Cytochrome c oxidase, subunit II.
 
    0.847
mmfD
Secreted protein (Tn6048).
  
    0.596
rpoO
RNA polymerase sigma O factor (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.563
Rmet_1798
Conserved hypothetical protein.
  
    0.562
Rmet_0584
Putative CBS:Cl-channel, voltage gated.
 
  
 0.526
arp3
Ankyrin repeat protein (ANK).
   
 
 0.460
Rmet_2634
Ankyrin repeat harboring signal peptide protein.
   
 
 0.460
agrA
Cation/multidrug efflux pump, RND family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
     0.441
Rmet_0192
Putative type-4 fimbrial biogenesis pilY1-related protein.
  
     0.425
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.