Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rmet_0113 | Rmet_0607 | Rmet_0113 | Rmet_0607 | Enoyl-CoA hydratase/carnithine racemase. | Hydroxymethylglutaryl-coenzyme a lyase active site; protein. | 0.970 |
Rmet_0113 | atoB | Rmet_0113 | Rmet_0106 | Enoyl-CoA hydratase/carnithine racemase. | acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.678 |
Rmet_0113 | atoB-2 | Rmet_0113 | Rmet_1853 | Enoyl-CoA hydratase/carnithine racemase. | acetyl-CoA acetyltransferase / thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.568 |
Rmet_0113 | bktB | Rmet_0113 | Rmet_1362 | Enoyl-CoA hydratase/carnithine racemase. | acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.523 |
Rmet_0113 | fadA | Rmet_0113 | Rmet_0387 | Enoyl-CoA hydratase/carnithine racemase. | acetyl-CoA C-acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.776 |
Rmet_0113 | phaA | Rmet_0113 | Rmet_1357 | Enoyl-CoA hydratase/carnithine racemase. | Acetyl-CoA acetyltransferase (Acetoacetyl-CoA thiolase); Belongs to the thiolase-like superfamily. Thiolase family. | 0.524 |
Rmet_0607 | Rmet_0113 | Rmet_0607 | Rmet_0113 | Hydroxymethylglutaryl-coenzyme a lyase active site; protein. | Enoyl-CoA hydratase/carnithine racemase. | 0.970 |
Rmet_0607 | Rmet_1723 | Rmet_0607 | Rmet_1723 | Hydroxymethylglutaryl-coenzyme a lyase active site; protein. | Enoyl-CoA hydratase/isomerase. | 0.927 |
Rmet_0607 | acsA | Rmet_0607 | Rmet_2699 | Hydroxymethylglutaryl-coenzyme a lyase active site; protein. | Acetoacetyl-CoA synthetase. | 0.929 |
Rmet_0607 | atoA | Rmet_0607 | Rmet_1154 | Hydroxymethylglutaryl-coenzyme a lyase active site; protein. | acetyl-CoA:acetoacetyl-CoA transferase, beta subunit. | 0.931 |
Rmet_0607 | atoB | Rmet_0607 | Rmet_0106 | Hydroxymethylglutaryl-coenzyme a lyase active site; protein. | acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.919 |
Rmet_0607 | atoB-2 | Rmet_0607 | Rmet_1853 | Hydroxymethylglutaryl-coenzyme a lyase active site; protein. | acetyl-CoA acetyltransferase / thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.919 |
Rmet_0607 | atoD | Rmet_0607 | Rmet_1153 | Hydroxymethylglutaryl-coenzyme a lyase active site; protein. | acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit. | 0.934 |
Rmet_0607 | bktB | Rmet_0607 | Rmet_1362 | Hydroxymethylglutaryl-coenzyme a lyase active site; protein. | acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.919 |
Rmet_0607 | fadA | Rmet_0607 | Rmet_0387 | Hydroxymethylglutaryl-coenzyme a lyase active site; protein. | acetyl-CoA C-acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.919 |
Rmet_0607 | phaA | Rmet_0607 | Rmet_1357 | Hydroxymethylglutaryl-coenzyme a lyase active site; protein. | Acetyl-CoA acetyltransferase (Acetoacetyl-CoA thiolase); Belongs to the thiolase-like superfamily. Thiolase family. | 0.919 |
Rmet_1723 | Rmet_0607 | Rmet_1723 | Rmet_0607 | Enoyl-CoA hydratase/isomerase. | Hydroxymethylglutaryl-coenzyme a lyase active site; protein. | 0.927 |
Rmet_1723 | atoB | Rmet_1723 | Rmet_0106 | Enoyl-CoA hydratase/isomerase. | acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.566 |
Rmet_1723 | atoB-2 | Rmet_1723 | Rmet_1853 | Enoyl-CoA hydratase/isomerase. | acetyl-CoA acetyltransferase / thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.569 |
Rmet_1723 | bktB | Rmet_1723 | Rmet_1362 | Enoyl-CoA hydratase/isomerase. | acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.523 |
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