STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpaF1Flp pilus assembly ATPase CpaF. (456 aa)    
Predicted Functional Partners:
tadB
Flp pilus assembly protein TadB.
 
  
 0.964
cpaE1
Flp pilus assembly ATPase.
 
  
 0.940
tadC
Bacterial type II secretion system protein, probably involved in Flp pilus synthesis.
 
  
 0.937
cpaC1
Flp pilus assembly protein secretin CpaC; Belongs to the bacterial secretin family.
  
 0.906
cpaB1
Flp pilus assembly CpaB precursor.
 
  
 0.896
Rmet_0645
Conserved hypothetical protein.
 
  
 0.855
cpaA1
Flp pilus assembly leader peptidase CpaA.
 
  
 0.827
Rmet_0649
Predicted ATPase with chaperone activity.
 
    0.808
Rmet_0643
Flp pilus assembly protein (TadG-like).
 
  
 0.806
Rmet_0644
Flp pilus assembly protein (TadG-like).
 
  
 0.792
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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