STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rubARubredoxin. (64 aa)    
Predicted Functional Partners:
hoxR
HoxR Rubredoxin (Rd)Electron transport; (belongs to CMGI-2).
  
    0.691
hemL
Glutamate-1-semialdehyde aminotransferase (aminomutase).
       0.539
hoxK
HoxK membrane-bound (NiFe) hydrogenase small subunit (belongs to CMGI-2).
  
 
 0.499
fur
Ferric uptake regulation protein; Acts as a global negative controlling element, employing Fe(2+) as a cofactor to bind the operator of the repressed genes. Regulator for biosynthesis of the siderophore alcaligin E.
 
  
 0.459
pilH
Type IV pilus response regulator PilH.
     
 0.425
hoxL
HoxL hydrogenase expression/formation protein hoxL (belongs to CMGI-2).
  
  
 0.420
pilG
Type IV pilus response regulator PilG.
  
  
 0.406
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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