STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dadA2D-amino-acid dehydrogenase 2 small subunit; Oxidative deamination of D-amino acids. (425 aa)    
Predicted Functional Partners:
dadA-2
D-amino acid dehydrogenase.
  
 
 
0.917
dadA
D-amino acid dehydrogenase; Oxidative deamination of D-amino acids.
  
  
 
0.913
tyrB
Tyrosine aminotransferase, tyrosine-repressible, PLP-dependent.
   
 
 0.905
dat
D-amino-acid transaminase, aminotransferase class IV (D-alanine transaminase).
     
 0.904
hisC1
Histidinol-phosphate transaminase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.902
ybiC
Hydroxyacid dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
  
 
 0.902
hisC
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.902
ampC
beta-lactamase/D-alanine carboxypeptidase.
  
  
 0.724
gltI-3
Glutamate and aspartate transporter subunit; periplasmic-binding component of ABC superfamily.
  
  
 0.565
gcvT-2
Aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex; The glycine cleavage system catalyzes the degradation of glycine.
  
 
 0.531
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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