STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0733Deacetylase, histone deacetylase family. (307 aa)    
Predicted Functional Partners:
Rmet_3537
Putative histone-lysine N-methyltransferase.
 
 0.646
Rmet_1772
GCN5-related N-acetyltransferase.
 
   
 0.642
htpG
Molecular chaperone HSP90 family; Molecular chaperone. Has ATPase activity.
   
 0.583
mltB
Membrane-bound lytic murein transglycosylase B.
  
    0.579
Rmet_2342
Putative AAA ATPase, central region.
 
 0.556
Rmet_2330
Putative plasmid-related DNA/RNA helicase.
   
 0.531
Rmet_0494
Superfamily II DNA/RNA helicase, SNF2 family.
    
 0.530
Rmet_2275
Putative AAA ATPase protein.
  
 0.503
metI
DL-methionine transporter subunit; membrane component protein of ABC superfamily.
  
    0.468
metN
DL-methionine transporter subunit; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
  
    0.465
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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