STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0881Conserved hypothetical protein. (173 aa)    
Predicted Functional Partners:
Rmet_0885
Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
 0.998
Rmet_0882
Predicted xylanase/chitin deacetylase.
    0.995
Rmet_3443
N-carbamoyl-L-amino-acid amidohydrolase.
  
 0.922
Rmet_1945
Amidase, hydantoinase/carbamoylase (family).
   
 0.874
ygfU
Transporter.
  
 0.864
Rmet_0886
Putative membrane protein.
 
    0.849
xdhB
Xanthine dehydrogenase, subunit B.
 
     0.724
guaD
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
    0.712
xdhA
Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A.
 
    0.684
xdhC
Xanthine dehydrogenase, maturation factor.
 
    0.670
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.