STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0888Fatty acid desaturase. (393 aa)    
Predicted Functional Partners:
Rmet_1219
Hypothetical protein.
  
    0.542
Rmet_3161
Conserved hypothetical protein.
  
    0.537
paaJ
Subunit of the phenylacetyl-CoA oxygenase/reductase.
  
  
 0.531
Rmet_0543
Putative Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region.
  
  
 0.523
Rmet_1218
Putative phosphoanhydride phosphorylase.
  
    0.518
Rmet_3467
Putative bifunctional P-450:NADPH-P450 reductase 2 (Includes: Cytochrome P450 102; NADPH--cytochrome P450 reductase).
     
 0.456
Rmet_0887
Putative membrane protein.
       0.449
hmp
Nitric oxide dioxygenase; Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (NO oxygenase) (NOD); Belongs to the globin family.
  
  
 0.448
guaD
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
  
    0.446
abmA
2-aminobenzoyl-CoA monooxygenase/reductase.
  
  
 0.436
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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