STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0895Putative ABC-type tungstate transport system, permease component. (284 aa)    
Predicted Functional Partners:
tupB
ABC-type transporter, periplasmic component: SulT family.
 
  
 0.969
Rmet_0896
Transcription regulator protein.
 
  
 0.900
Rmet_2919
ABC-type transporter, ATPase component.
    
  0.808
fdhB
Formate dehydrogenase iron-sulfur subunit.
 
  
 0.794
fdhC
Formate dehydrogenase subunit C.
 
  
 0.778
torD
Formate dehydrogenase-specific chaperone.
 
    0.776
fdhD-3
Formate dehydrogenase, subunit FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
    0.770
fdhA
Formate dehydrogenase alpha subunit (Fe4S4 domain); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
    0.770
Rmet_2764
4Fe-4S ferredoxin, iron-sulfur binding protein.
  
  
 0.761
fdsR
Transcriptional regulator of formate dehydrogenase operon.
 
  
 0.749
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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