STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lolEABC-type transporter involved in lysophospholipase L1 biosynthesis, permease component. (851 aa)    
Predicted Functional Partners:
Rmet_0899
Protozoan/cyanobacterial globin family protein.
 
    0.813
Rmet_1881
Acyl-CoA thioesterase.
 
    0.802
Rmet_0900
Conserved hypothetical protein.
  
    0.762
Rmet_0897
Conserved hypothetical protein.
  
    0.643
ybbA-2
Putative transporter, ATP-binding component (ABC superfamily).
 
    0.572
Rmet_0902
Putative Rossmann fold nucleotide-binding protein / Lysine decarboxylase family protein; Belongs to the LOG family.
  
    0.502
Rmet_0901
Transcriptional regulator, TetR/AcrR-family.
  
    0.501
Rmet_0896
Transcription regulator protein.
  
    0.441
lolD
Outer membrane-specific lipoprotein transporter subunit; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
  
 0.436
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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