STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0899Protozoan/cyanobacterial globin family protein. (147 aa)    
Predicted Functional Partners:
lolE
ABC-type transporter involved in lysophospholipase L1 biosynthesis, permease component.
 
    0.813
Rmet_0900
Conserved hypothetical protein.
  
    0.786
Rmet_0897
Conserved hypothetical protein.
  
    0.593
hmp
Nitric oxide dioxygenase; Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (NO oxygenase) (NOD); Belongs to the globin family.
  
  
 0.536
Rmet_0902
Putative Rossmann fold nucleotide-binding protein / Lysine decarboxylase family protein; Belongs to the LOG family.
  
    0.528
xerC
Tyrosine-based site-specific tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
   
    0.526
Rmet_0901
Transcriptional regulator, TetR/AcrR-family.
  
    0.524
Rmet_0729
Conserved hypothetical protein.
  
    0.461
Rmet_0995
Putative transmembrane protein.
  
    0.450
Rmet_0896
Transcription regulator protein.
  
    0.430
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.