STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0901Transcriptional regulator, TetR/AcrR-family. (236 aa)    
Predicted Functional Partners:
Rmet_0902
Putative Rossmann fold nucleotide-binding protein / Lysine decarboxylase family protein; Belongs to the LOG family.
  
    0.797
Rmet_1051
Hydrolase, alpha/beta fold family.
  
    0.668
Rmet_3378
GCN5-related N-acetyltransferase.
  
  
 0.599
Rmet_0083
Conserved hypothetical protein.
  
  
 0.549
Rmet_0899
Protozoan/cyanobacterial globin family protein.
  
    0.524
Rmet_0900
Conserved hypothetical protein.
  
    0.524
lolE
ABC-type transporter involved in lysophospholipase L1 biosynthesis, permease component.
  
    0.501
Rmet_0744
Putative membrane protein.
  
     0.499
ompW1
Porin, OmpW family.
  
    0.495
Rmet_2706
Conserved hypothetical protein; putative transmembrane protein.
  
     0.457
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.