STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0907Putative conserved hypothetical protein with membrane spanning domain, RDD family. (181 aa)    
Predicted Functional Partners:
Rmet_0906
Putative acetyltransferase and hydrolase with the alpha/beta hydrolase fold.
  
    0.795
petC
Cytochrome c1 precursor (transmembrane protein).
  
     0.712
Rmet_3284
Cytochrome c4.
  
     0.690
Rmet_3473
Cytochrome c family protein.
  
     0.664
Rmet_1129
Conserved hypothetical protein.
 
    0.641
Rmet_0908
Conserved hypothetical protein.
  
  
 0.630
rdgC
Recombination-associated protein rdgC (DNA recombination-dependent growth factor C); May be involved in recombination; Belongs to the RdgC family.
 
    0.595
Rmet_0909
Conserved hypothetical protein.
       0.588
rpoR
RNA polymerase sigma R factor (ECF); Belongs to the sigma-70 factor family. ECF subfamily.
       0.588
Rmet_1069
Putative lipoprotein.
  
     0.581
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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