STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0972Putative aminoglycoside phosphotransferase. (358 aa)    
Predicted Functional Partners:
Rmet_0968
Acyl-CoA dehydrogenase (ACAD).
 
 0.981
Rmet_0108
acyl-CoA dehydrogenase, short-chain specific.
 
 
 0.727
Rmet_1849
Putative oxidoreductase/alcolhol dehydrogenase.
 
    0.710
paaG
acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.706
Rmet_2119
NADPH:quinone oxidoreductase.
 
   0.681
fadB
3-hydroxyacyl-CoA dehydrogenase; Fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase.
 
 
 0.630
Rmet_1863
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
 
 0.585
Rmet_1814
acyl-CoA dehydrogenase, short-chain specific.
 
 0.545
paaH
3-hydroxybutyryl-CoA dehydrogenase.
  
  
 0.539
Rmet_0944
Acyl-CoA dehydrogenase.
 
 0.536
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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