STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0983Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family. (300 aa)    
Predicted Functional Partners:
Rmet_0824
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
    0.751
Rmet_3079
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
     0.734
Rmet_3555
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.732
Rmet_2148
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
     0.730
Rmet_1631
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
    0.717
ptxR
Transcriptional regulator, LysR family, acts on the phosphonate ptx genes.
  
     0.717
Rmet_1767
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.662
hutG
N-Formylglutamate amidohydrolase.
 
    0.578
oxyR
Oxidative stress-inducible genes activator; Belongs to the LysR transcriptional regulatory family.
  
    0.540
bug-11
Extra-cytoplasmic Solute Receptor.
  
    0.530
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.