Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rmet_0185 | Rmet_0995 | Rmet_0185 | Rmet_0995 | Conserved hypothetical protein. | Putative transmembrane protein. | 0.744 |
Rmet_0185 | Rmet_2683 | Rmet_0185 | Rmet_2683 | Conserved hypothetical protein. | Putative Type VI pilus assembly protein (PilW-like). | 0.705 |
Rmet_0185 | Rmet_2687 | Rmet_0185 | Rmet_2687 | Conserved hypothetical protein. | Putative Type IV pili related protein. | 0.639 |
Rmet_0185 | Rmet_2966 | Rmet_0185 | Rmet_2966 | Conserved hypothetical protein. | Response regulator containing an atypical phosphorylation pocket. | 0.725 |
Rmet_0185 | Rmet_3540 | Rmet_0185 | Rmet_3540 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.707 |
Rmet_0185 | addA | Rmet_0185 | Rmet_2131 | Conserved hypothetical protein. | UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. | 0.718 |
Rmet_0185 | addB | Rmet_0185 | Rmet_2132 | Conserved hypothetical protein. | ATP-dependent nuclease, subunit B. | 0.747 |
Rmet_0185 | gspL | Rmet_0185 | Rmet_3389 | Conserved hypothetical protein. | General secretion pathway protein L. | 0.653 |
Rmet_0185 | pehS | Rmet_0185 | Rmet_3091 | Conserved hypothetical protein. | Polygalacturonase histidine kinase regulator. | 0.685 |
Rmet_0995 | Rmet_0185 | Rmet_0995 | Rmet_0185 | Putative transmembrane protein. | Conserved hypothetical protein. | 0.744 |
Rmet_0995 | Rmet_2683 | Rmet_0995 | Rmet_2683 | Putative transmembrane protein. | Putative Type VI pilus assembly protein (PilW-like). | 0.739 |
Rmet_0995 | Rmet_2687 | Rmet_0995 | Rmet_2687 | Putative transmembrane protein. | Putative Type IV pili related protein. | 0.767 |
Rmet_0995 | Rmet_2966 | Rmet_0995 | Rmet_2966 | Putative transmembrane protein. | Response regulator containing an atypical phosphorylation pocket. | 0.753 |
Rmet_0995 | Rmet_3540 | Rmet_0995 | Rmet_3540 | Putative transmembrane protein. | Conserved hypothetical protein. | 0.746 |
Rmet_0995 | addA | Rmet_0995 | Rmet_2131 | Putative transmembrane protein. | UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. | 0.743 |
Rmet_0995 | addB | Rmet_0995 | Rmet_2132 | Putative transmembrane protein. | ATP-dependent nuclease, subunit B. | 0.767 |
Rmet_0995 | glnE | Rmet_0995 | Rmet_0994 | Putative transmembrane protein. | Glutamine synthetase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transducti [...] | 0.798 |
Rmet_0995 | gspL | Rmet_0995 | Rmet_3389 | Putative transmembrane protein. | General secretion pathway protein L. | 0.760 |
Rmet_0995 | pehS | Rmet_0995 | Rmet_3091 | Putative transmembrane protein. | Polygalacturonase histidine kinase regulator. | 0.787 |
Rmet_2683 | Rmet_0185 | Rmet_2683 | Rmet_0185 | Putative Type VI pilus assembly protein (PilW-like). | Conserved hypothetical protein. | 0.705 |
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