STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1106Putative membrane protein. (542 aa)    
Predicted Functional Partners:
Rmet_1105
Putative membrane protein (fragment).
 
    0.956
Rmet_1107
Putative membrane protein (modular protein).
  
    0.875
fcuA
Ferrichrome receptor.
 
  
 0.842
Rmet_1819
TonB-dependent siderophore receptor.
 
  
 0.716
Rmet_1104
Putative ferric siderophore receptor.
 
  
 0.694
Rmet_0837
Hydroxamate-type ferrisiderophore receptor.
 
  
 0.651
Rmet_1114
Permeases of the major facilitator superfamily.
  
  
 0.534
Rmet_1109
Conserved hypothetical protein.
   
    0.511
Rmet_1794
Conserved hypothetical protein.
   
  
 0.501
Rmet_1365
Conserved hypothetical protein.
  
   
0.497
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.