STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1109Conserved hypothetical protein. (122 aa)    
Predicted Functional Partners:
lysA
Diaminopimelate decarboxylase (DAP decarboxylase); Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
    0.731
Rmet_1112
Putative siderophore biosynthesis protein.
  
    0.707
ocd
Ornithine cyclodeaminase (OCD).
  
    0.656
Rmet_1107
Putative membrane protein (modular protein).
   
    0.526
Rmet_1106
Putative membrane protein.
   
    0.511
Rmet_1114
Permeases of the major facilitator superfamily.
  
    0.459
hpcH
HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
    0.451
Rmet_1113
Putative siderophore synthetase component protein.
  
    0.451
Rmet_1115
Conserved hypothetical protein (IucA/IucC-like).
  
    0.451
cysK
Cysteine synthase; Catalyzes the synthesis of N-((2S)-2-amino-2-carboxyethyl)-L- glutamate (ACEGA) from O-phospho-L-serine and L-glutamate.
  
    0.449
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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