STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aleBFerric alcaligin E. (839 aa)    
Predicted Functional Partners:
Rmet_1115
Conserved hypothetical protein (IucA/IucC-like).
 
  
 0.792
Rmet_1112
Putative siderophore biosynthesis protein.
 
  
 0.779
Rmet_1113
Putative siderophore synthetase component protein.
 
  
 0.760
Rmet_1119
FecR-like transmembrane sensor.
 
  
 0.757
phcA
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
   
 0.739
phaC1
Poly(3-hydroxybutyrate) polymerase.
   
  
 0.679
catA
Catechol 1,2-dioxygenase.
   
  
 0.679
Rmet_1114
Permeases of the major facilitator superfamily.
 
  
 0.648
tonB
TonB-like protein, membrane spanning.
 
 
 0.648
Rmet_3055
Putative TonB-like protein.
 
 
 0.641
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.