STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1141Transcriptional regulator, GntR-family. (233 aa)    
Predicted Functional Partners:
Rmet_1929
Regulatory protein GntR, HTH.
 
  
 0.776
Rmet_1140
NAD binding site:FAD dependent oxidoreductase.
  
  
 0.686
Rmet_3445
Transcriptional regulator, GntR-family.
 
  
 0.671
Rmet_0884
Transcriptional regulator, GntR-family.
 
  
 0.641
Rmet_2488
Transcriptional regulator, GntR-family.
  
    0.639
hutC
Histidine utilization repressor.
  
    0.584
Rmet_2231
ABC-type transporter, permease component.
   
    0.526
phnF
Putative DNA-binding transcriptional regulator of phosphonate uptake and biodegradation.
  
    0.496
Rmet_1905
Transcriptional regulator, LacI-family.
  
 
 0.466
Rmet_1142
Conserved hypothetical protein.
  
    0.463
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.