STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykgEPutative hydroxyacid oxidoreductase (Fe-S centre). (241 aa)    
Predicted Functional Partners:
Rmet_1207
4Fe-4S ferredoxin, iron-sulfur binding protein.
 
 0.997
Rmet_2448
Conserved hypothetical protein.
 
 
 0.921
sdhB
Succinate dehydrogenase, FeS subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
 
 
 0.912
Rmet_1208
Hypothetical protein.
  
    0.713
lldP
Glycolate transporter; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.641
glcD-2
Glycolate oxidase subunit, FAD-linked.
  
 0.635
Rmet_1205
Transcriptional regulator, IclR family.
  
    0.476
Rmet_2281
Conserved hypothetical protein.
  
  
 0.456
Rmet_1323
Hypothetical protein.
  
  
 0.455
glpD
Sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding protein.
 
  
 0.450
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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