STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1257Conserved hypothetical protein. (177 aa)    
Predicted Functional Partners:
parG
Regulator of plasmid copy number.
 
     0.948
traF
Plasmid conjugal transfer transmembrane protein.
 
    0.948
parA
ATPase involved in plasmid partitioning.
 
    0.912
repA
Replication initiator and transcription repressor protein.
 
    0.872
virD2
Relaxase type IV secretory pathway VirD2(protein belongs to CMGI-2).
 
    0.863
Rmet_1253
Putative dna binding protein.
 
     0.856
Rmet_1252
Conserved hypothetical protein.
 
    0.836
virD2-3
Relaxase type IV secretory pathway VirD2.
 
    0.783
traF-2
Plasmid conjugal transfer transmembrane protein.
 
    0.781
virD2-2
Relaxase type IV secretory pathway VirD2.
 
    0.781
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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