STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnpB-3IstB-like ATP binding protein ISRme20. (268 aa)    
Predicted Functional Partners:
tnpA-6
Transposase (DDE site) ISRme20.
 
  
 0.952
tnpA-3
Transposase catalytic site ISRme4.
  
 0.802
tnpA-29
Transposase catalytic site ISRme4.
  
 0.799
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
 
 0.712
tnpA-5
Transposase IS1090.
       0.477
Rmet_1265
Conserved hypothetical protein; Belongs to the LOG family.
  
    0.473
Rmet_1266
Putative RNA Modifying Enzyme.
  
    0.466
Rmet_6446
Conserved hypothetical protein.
       0.464
ybhR
Permease component of ABC superfamily (CMGI-2).
  
    0.448
ybhS
Putative transporter subunit: permease component of ABC superfamily.
  
    0.447
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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