STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ritA1Tyrosine-based site-specific recombinase (Recombinase triad in CMGI-2); Transposase (fragment); Belongs to the 'phage' integrase family. (410 aa)    
Predicted Functional Partners:
ritB1
Tyrosine based site-specific recombinase.
    0.952
ritC1
Tyrosine-based site-specific recombinase; Belongs to the 'phage' integrase family.
 
   
0.842
ritB2
Tyrosine-based site-specific recombinase.
 
    0.774
ftsK-2
DNA translocase ftsK, DNA segregation ATPase; Belongs to the FtsK/SpoIIIE/SftA family.
 
   
 0.500
ftsK
DNA segregation ATPase ftsk/spoIIIE protein.
 
   
 0.478
xerC
Tyrosine-based site-specific tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
 
 
0.452
parA-4
ATPase involved in chromosome partitioning.
 
  
 0.426
recR
Gap repair protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
 
   
 0.424
parB-4
Exonuclease involved in chromosome partitioning ParB; Belongs to the ParB family.
  
  
 0.409
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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