STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytTResponse regulator containing a LytTR DNA-binding domain. (273 aa)    
Predicted Functional Partners:
Rmet_1380
Signal transduction histidine kinase.
 
 
 0.973
ybeY
Putative metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
  
 0.742
ytfP
Conserved hypothetical protein.
  
    0.575
rraA
Ribonuclease E (RNase E) inhibitor protein; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions.
       0.574
pilI
Type IV pilus signal transduction protein PilI.
  
  
 0.549
Rmet_1905
Transcriptional regulator, LacI-family.
  
  
 0.528
pilL2
Type IV pilus protein histidine kinase/response regulator hybrid PilL.
 
   
 0.501
pilG
Type IV pilus response regulator PilG.
  
  
 0.498
cysB
DNA-binding transcriptional activator of cysteine biosynthesis; Belongs to the LysR transcriptional regulatory family.
 
    0.472
pilH
Type IV pilus response regulator PilH.
  
  
 0.471
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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