STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbbR1RuBisCO operon transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (293 aa)    
Predicted Functional Partners:
cbbL
Ribulose 1,5-bisphosphate carboxylase/oxygenase, RuBisCo (type I) large subunit (CbbL); RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
 
   
 0.798
Rmet_1939
Transcriptional regulator, lysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.754
Rmet_3555
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.744
cbbS
Ribulose 1,5-bisphosphate carboxylase/oxygenase, RuBisCO (type I) small subunit (CbbS).
 
  
 0.719
Rmet_3079
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
     0.709
Rmet_3216
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
     0.652
Rmet_6452
Hypothetical protein.
       0.645
tnpA-13
Transposase IS1090.
  
    0.601
Rmet_1757
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.572
cbbO
Rubisco activation protein.
 
  
 0.536
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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