STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1555Lipoprotein. (110 aa)    
Predicted Functional Partners:
trbL-2
Conjugal transfer transmembrane protein.
  
  
 0.793
trbI-2
Type IV secretion system transmembrane protein (conjugal transfer:mating pair formation).
  
  
 0.775
trbG-2
Conjugal transfer protein precursor.
  
  
 0.769
trbF-2
Conjugal transfer precursor protein.
  
  
 0.767
trbE-2
ATPase involved in conjugal transfer CagE TrbE VirB component of type IV transporter system (belongs to transfer module of genomic island CMGI-3).
  
  
 0.766
trbJ-2
Mating pair formation protein.
  
    0.760
Rmet_1560
Conserved hypothetical protein; (protein belongs to CMGI-3).
       0.755
trbD-2
Putative conjugal transfer transmembrane protein.
  
  
 0.740
traG-2
Conjugal transfer protein.
  
  
 0.737
trbB-2
P-type conjugative transfer ATPase TrbB (CMGI-2).
  
  
 0.737
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.