STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1600Conserved hypothetical protein. (610 aa)    
Predicted Functional Partners:
betB
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
 0.916
puuC
gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent; Belongs to the aldehyde dehydrogenase family.
   
 
 0.915
Rmet_1898
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
 0.915
Rmet_3207
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
 0.915
speE
Spermidine synthase (Putrescine aminopropyltransferase) (SPDSY); Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
     
  0.900
speE-2
Spermidine synthase (Putrescine aminopropyltransferase) (PAPT) (SPDSY); Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
     
  0.900
Rmet_1599
Cytochrome c, class I precursor.
 
  
 0.868
Rmet_1598
ABC-type transporter: periplasmic glycine betaine/choline-binding lipoprotein and permease components transmembrane.
  
    0.729
Rmet_0540
Putative regulatory protein, TetR family.
  
    0.663
Rmet_3542
Hypothetical protein.
  
     0.623
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.