STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
garLalpha-dehydro-beta-deoxy-D-glucarate aldolase; Belongs to the HpcH/HpaI aldolase family. (261 aa)    
Predicted Functional Partners:
garR
Tartronate semialdehyde reductase.
  
 
  0.953
gudD
(D)-glucarate dehydratase 1.
 
 
 0.949
glxR
Tartronate semialdehyde reductase, NADH-dependent.
  
 
  0.841
hyi
Hydroxypyruvate isomerase; Belongs to the hyi family.
   
 
 0.804
gcl
Glyoxylate carboligase; Belongs to the TPP enzyme family.
   
 
  0.802
ybiC
Hydroxyacid dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
 
    0.785
bug-13
Extra-cytoplasmic Solute Receptor.
  
    0.743
xylJ
2-hydroxypent-2,4-dienoate hydratase (protein belongs to CMGI-2).
  
 0.730
dmpH
4-oxalocrotonate decarboxylase (protein belongs to CMGI-2).
  
 0.713
Rmet_1631
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
    0.707
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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