STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bug-13Extra-cytoplasmic Solute Receptor. (333 aa)    
Predicted Functional Partners:
Rmet_0825
Conserved hypothetical protein.
  
 0.840
tctA
Tricarboxylate transport protein TctA.
  
 0.838
ybiC
Hydroxyacid dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
  
    0.777
garL
alpha-dehydro-beta-deoxy-D-glucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
  
    0.743
Rmet_1631
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
    0.678
garR
Tartronate semialdehyde reductase.
  
    0.678
Rmet_0826
Putative transmembrane protein; putative transporter, APC superfamily.
 
  
 0.591
Rmet_1636
Acetolactate synthase large subunit; Belongs to the TPP enzyme family.
       0.454
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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