STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1653Putative membrane associated dehydrogenase (flavoprotein). (404 aa)    
Predicted Functional Partners:
creC
Sensory histidine kinase in two-component regulatory system with CreB or PhoB, regulator of the CreBC regulon.
 
    0.737
creB
DNA-binding response regulator in two-component regulatory system with CreC.
  
  
 0.713
Rmet_1740
Putative membrane protein.
  
    0.680
creD
Inner membrane protein.
  
    0.604
etfB
Electron transfer flavoprotein subunit beta (Beta-ETF) (Electron transfer flavoprotein small subunit) (ETFSS).
  
 
 0.590
Rmet_1739
Conserved hypothetical protein.
  
    0.577
Rmet_1944
Squalene/phytoene synthase.
  
  
 0.564
bamE
Putative small protein A (tmRNA-binding)-related protein (SmpA/OmlA fragment); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
    0.550
Rmet_6460
Hypothetical protein.
       0.545
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.542
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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