STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1683Putative transporter subunit: membrane component of ABC superfamily. (397 aa)    
Predicted Functional Partners:
Rmet_1685
Putative HlyD family secretion protein.
 
  
 0.962
rbbA
Fused ribosome-associated ATPase: ATP-binding protein; ATP-binding protein; membrane protein.
 
 
0.932
Rmet_1686
RND efflux system, outer membrane lipoprotein, NodT.
  
  
 0.766
Rmet_0350
Secretion protein (HlyD-related).
 
  
 0.654
ybhS
Putative transporter subunit: permease component of ABC superfamily.
 
 
 
0.577
Rmet_0349
ABC-type multidrug transporter, ATPase component.
  
 0.571
ybhR
Permease component of ABC superfamily (CMGI-2).
 
 
 
0.559
Rmet_1277
Putative transporter fused subunits of ABC superfamily: ATP-binding components (fragment).
 
  
 0.549
Rmet_0348
ABC-type multidrug transporter, permease component.
 
 
 
0.546
Rmet_6467
Hypothetical protein.
       0.512
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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