STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1685Putative HlyD family secretion protein. (355 aa)    
Predicted Functional Partners:
Rmet_1683
Putative transporter subunit: membrane component of ABC superfamily.
 
  
 0.962
rbbA
Fused ribosome-associated ATPase: ATP-binding protein; ATP-binding protein; membrane protein.
 
  
 0.957
Rmet_1686
RND efflux system, outer membrane lipoprotein, NodT.
 
 
 0.879
ybhS
Putative transporter subunit: permease component of ABC superfamily.
 
  
 0.565
ybhR
Permease component of ABC superfamily (CMGI-2).
 
  
 0.524
Rmet_6467
Hypothetical protein.
       0.516
Rmet_2711
Type I secretion outer membrane efflux protein (TolC-like).
  
 
 0.491
Rmet_0348
ABC-type multidrug transporter, permease component.
 
  
 0.478
Rmet_1710
Outer membrane heavy metal efflux protein.
  
 
 0.443
agrC
RND efflux system, outer membrane lipoprotein, NodT.
  
 
 0.443
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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