STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1710Outer membrane heavy metal efflux protein. (519 aa)    
Predicted Functional Partners:
Rmet_1711
Multidrug resistance efflux pump.
 
 
 0.938
Rmet_1712
Putative membrane protein.
 
    0.874
Rmet_1709
Hypothetical protein, putative membrane protein (permease).
 
    0.858
acrA
Cation/multidrug efflux system, mebrane-fusion component; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.777
Rmet_1713
Putative membrane protein, putative ion channel.
 
    0.777
acrA-2
Multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.745
acrF
Multidrug efflux system protein.
 
 0.694
acrB
Multidrug efflux system protein.
 
 0.651
Rmet_1708
Hypothetical protein.
  
    0.623
acrD
Aminoglycoside/multidrug efflux system.
 
 0.622
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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