STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1712Putative membrane protein. (354 aa)    
Predicted Functional Partners:
Rmet_1711
Multidrug resistance efflux pump.
 
    0.948
Rmet_1709
Hypothetical protein, putative membrane protein (permease).
 
  
 0.919
Rmet_1710
Outer membrane heavy metal efflux protein.
 
    0.874
Rmet_1713
Putative membrane protein, putative ion channel.
 
    0.873
Rmet_0335
Putative transglycosylase; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella. In the N-terminal section; belongs to the bacterial solute- binding protein 3 family.
  
    0.668
Rmet_1708
Hypothetical protein.
  
    0.617
Rmet_3542
Hypothetical protein.
  
    0.548
Rmet_1705
Conserved hypothetical protein.
  
    0.545
Rmet_1707
Conserved hypothetical protein.
 
    0.527
Rmet_0422
Conserved hypothetical protein (secreted).
  
     0.524
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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