STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1732Transcriptional regulator, AraC family. (340 aa)    
Predicted Functional Partners:
Rmet_1731
Conserved hypothetical protein.
 
    0.707
Rmet_1730
Uncharacterized protein; Major facilitator superfamily (MFS) metabolite/H+ symporter (fragment).
  
    0.542
Rmet_3599
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.486
Rmet_3601
Conserved hypothetical protein; predicted metal-dependent hydrolase.
  
    0.485
Rmet_1013
Transcriptional regulator, TetR family.
  
  
 0.475
Rmet_1763
Conserved hypothetical protein.
 
    0.450
Rmet_2524
Putative transcriptional regulator, LuxR-family.
  
   
 0.421
rpoA
RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.403
Rmet_1908
Conserved hypothetical protein.
 
 
 0.400
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.