STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1791Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (402 aa)    
Predicted Functional Partners:
ybbA
ABC transporter related, ATP binding protein.
 
 
 0.944
Rmet_1794
Conserved hypothetical protein.
 
 
 0.940
Rmet_1793
ABC transporter, permease protein precursor.
 
 
 0.939
hmzA
RND divalent metal cation efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.530
glcD
Glycolate oxidase subunit GlcD.
  
    0.518
acrF
Multidrug efflux system protein.
 
 
 0.515
acrD
Aminoglycoside/multidrug efflux system.
 
 
 0.497
acrB
Multidrug efflux system protein.
 
 
 0.488
Rmet_2711
Type I secretion outer membrane efflux protein (TolC-like).
  
 
 0.485
acr
Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family; Multidrug resistance efflux transporter, acriflavin resistance protein (MtdBC-AcrB/AcrD/AcrF family); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.474
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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