STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1796Efflux transporter permease. (625 aa)    
Predicted Functional Partners:
Rmet_1795
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
 
    0.611
iscU
FeS cluster assembly scaffold protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
    0.552
Rmet_1740
Putative membrane protein.
 
  
 0.511
Rmet_2890
Putative glyoxalase (bleomycin resistance protein), dioxygenase superfamily.
  
     0.508
Rmet_1907
Outer membrane protein (porin).
  
    0.500
Rmet_1711
Multidrug resistance efflux pump.
 
  
 0.446
fimA
Type-1 fimbrial protein subunit precursor.
  
     0.418
Rmet_1908
Conserved hypothetical protein.
  
    0.418
Rmet_1170
Cytochrome c biogenesis protein, transmembrane region.
 
    0.401
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.