STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1800Putative transcriptional regulator, MarR family. (183 aa)    
Predicted Functional Partners:
yidJ
Sulfatase.
 
  
 0.573
bug-18
Extra-cytoplasmic Solute Receptor.
  
    0.552
Rmet_1799
Transcriptional regulator, ArsR family.
  
  
 0.483
Rmet_1798
Conserved hypothetical protein.
  
    0.463
Rmet_0339
Monooxygenase, FAD-binding:FAD dependent oxidoreductase.
 
  
 0.460
Rmet_0340
Conserved hypothetical protein.
  
    0.448
mhpD2
2-Oxopent-4-enoate hydratase.
 
    0.445
Rmet_3196
Conserved hypothetical protein.
  
    0.437
Rmet_1739
Conserved hypothetical protein.
  
  
 0.436
Rmet_1598
ABC-type transporter: periplasmic glycine betaine/choline-binding lipoprotein and permease components transmembrane.
  
  
 0.422
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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