STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1834Transcriptional regulator, GntR-family. (247 aa)    
Predicted Functional Partners:
Rmet_1929
Regulatory protein GntR, HTH.
 
  
 0.759
ygbL
Putative class II aldolase.
 
    0.703
Rmet_1836
Conserved hypothetical protein.
 
    0.674
Rmet_3445
Transcriptional regulator, GntR-family.
 
  
 0.673
ygbJ
Putative dehydrogenase, with NAD(P)-binding Rossmann-fold domain.
 
    0.657
Rmet_1838
MFS transporter, ACS family.
 
  
 0.647
Rmet_2488
Transcriptional regulator, GntR-family.
  
    0.580
Rmet_0884
Transcriptional regulator, GntR-family.
 
  
 0.578
hutC
Histidine utilization repressor.
  
  
 0.550
Rmet_6478
Hypothetical protein.
       0.540
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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