STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1836Conserved hypothetical protein. (422 aa)    
Predicted Functional Partners:
ygbL
Putative class II aldolase.
  
 0.985
ygbJ
Putative dehydrogenase, with NAD(P)-binding Rossmann-fold domain.
 
  
 0.888
Rmet_1840
Nucleoside-diphosphate-sugar epimerase.
 
    0.869
hyi1
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
  
 0.836
Rmet_1838
MFS transporter, ACS family.
  
    0.780
Rmet_6478
Hypothetical protein.
       0.773
Rmet_1834
Transcriptional regulator, GntR-family.
 
    0.674
Rmet_6418
Hypothetical protein.
  
     0.468
hyi
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
  
 0.417
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.