STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bug-21Extra-cytoplasmic Solute Receptor. (325 aa)    
Predicted Functional Partners:
Rmet_0825
Conserved hypothetical protein.
  
 0.840
tctA
Tricarboxylate transport protein TctA.
  
 0.838
Rmet_0826
Putative transmembrane protein; putative transporter, APC superfamily.
 
  
 0.652
Rmet_1907
Outer membrane protein (porin).
  
    0.648
Rmet_1905
Transcriptional regulator, LacI-family.
  
    0.605
Rmet_2260
Conserved hypothetical protein.
   
    0.526
Rmet_1908
Conserved hypothetical protein.
  
    0.451
Rmet_1909
Zinc-containing alcohol dehydrogenase superfamily.
  
    0.445
Rmet_1910
Conserved hypothetical protein.
  
    0.429
tctB
Component of transporter, tripartite tricarboxylate transport (TTT) family.
 
  
 0.426
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.