Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1908Conserved hypothetical protein. (116 aa)    
Predicted Functional Partners:
Rmet_1909
Zinc-containing alcohol dehydrogenase superfamily.
 
    0.885
Rmet_1911
NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR.
 
  
 0.872
Rmet_1910
Conserved hypothetical protein.
 
    0.833
Rmet_1907
Outer membrane protein (porin).
 
    0.788
Rmet_1740
Putative membrane protein.
 
  
 0.786
Rmet_3196
Conserved hypothetical protein.
  
    0.756
Rmet_3542
Hypothetical protein.
  
     0.729
Rmet_2594
Conserved hypothetical protein (secreted).
  
     0.727
Rmet_1912
Oxidoreductase (protocatechuate 3,4-dioxygenase beta subunit / hydroxyquinol 1,2-dioxygenase).
 
    0.708
Rmet_0587
Excisionase/Xis, DNA-binding protein.
  
   
 0.678
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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