STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1908Conserved hypothetical protein. (116 aa)    
Predicted Functional Partners:
Rmet_1909
Zinc-containing alcohol dehydrogenase superfamily.
 
    0.886
Rmet_1911
NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR.
 
  
 0.872
Rmet_1910
Conserved hypothetical protein.
 
    0.834
Rmet_1907
Outer membrane protein (porin).
 
    0.787
Rmet_1740
Putative membrane protein.
 
  
 0.782
Rmet_3196
Conserved hypothetical protein.
  
    0.754
Rmet_3542
Hypothetical protein.
  
    0.730
Rmet_2594
Conserved hypothetical protein (secreted).
  
    0.729
Rmet_1912
Oxidoreductase (protocatechuate 3,4-dioxygenase beta subunit / hydroxyquinol 1,2-dioxygenase).
 
    0.710
Rmet_0587
Excisionase/Xis, DNA-binding protein.
  
  
 0.683
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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