STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppB-2ABC-type transporter, permease component: PepT family. (316 aa)    
Predicted Functional Partners:
dppF
Dipeptide transporter; ATP-binding component of ABC superfamily; Belongs to the ABC transporter superfamily.
 
 0.971
dppC-2
Putative peptide transporter permease subunit: membrane component of ABC superfamily.
  
 0.967
ddpD
D-ala-D-ala transporter subunit; ATP-binding component of ABC superfamily; Belongs to the ABC transporter superfamily.
 
 
 0.964
dppA-2
ABC-type transporter, periplasmic component: PepT family.
 
 
 0.933
dppD
Dipeptide transporter; ATP-binding component of ABC superfamily; Belongs to the ABC transporter superfamily.
 
 
 0.881
dppC-3
Dipeptide transporter; membrane component of ABC superfamily.
  
 0.866
yliD
Putative peptide transporter permease subunit: membrane component of ABC superfamily.
  
 0.865
dppC
Dipeptide transporter; membrane component of ABC superfamily.
  
 0.865
dppA-3
Periplasmic dipeptide transport protein (ABC-type dipeptide transport system, periplasmic component).
 
 0.844
Rmet_2496
Putative extracellular solute-binding, family 5 ABC-type transporter protein.
 
 0.838
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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