STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nirCCytochrome c55X (precursor). (129 aa)    
Predicted Functional Partners:
nirF
Cytochrome d1, heme region.
 
 
 0.989
nirG
Transcriptional Regulator, AsnC family.
 
  
 0.989
nirH
Nitrite reductase heme biosynthesis H protein.
 
  
 0.989
nirJ
Heme d1 biosynthesis protein NirJ.
 
  
 0.968
nirN
Nitrite reductase (NO-forming).
 
 
 0.927
Rmet_3331
Cytochrome c, class I:Cytochrome d1, heme region precursor.
 
 
 0.926
nirS
Nitrite reductase precursor (Cytochrome cd1) (Cytochrome oxidase) (Hydroxylamine reductase).
 
  
 0.902
nirJ-2
Heme d1 biosynthesis protein NirJ.
 
  
 0.863
Rmet_2068
Conserved hypothetical protein.
  
 
 0.837
nirM
Cytochrome c-551 precursor (Cytochrome c551) (Cytochrome C8).
  
  
 0.804
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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