STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
addAUvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. (1187 aa)    
Predicted Functional Partners:
addB
ATP-dependent nuclease, subunit B.
 
   
 0.963
Rmet_2362
Conserved hypothetical protein.
  
 
 0.940
Rmet_0995
Putative transmembrane protein.
 
     0.743
Rmet_0185
Conserved hypothetical protein.
  
     0.718
Rmet_3540
Conserved hypothetical protein.
  
     0.711
Rmet_2966
Response regulator containing an atypical phosphorylation pocket.
  
     0.684
pehS
Polygalacturonase histidine kinase regulator.
 
    0.673
gspL
General secretion pathway protein L.
  
    0.669
gspJ
General secretion pathway protein J.
 
     0.660
Rmet_2687
Putative Type IV pili related protein.
 
     0.647
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.