STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdeAc-di-GMP phosphodiesterase A. (873 aa)    
Predicted Functional Partners:
Rmet_6548
Putative sensory box protein/GGDEF family protein.
 
 0.975
Rmet_0591
Putative signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
 
 
0.971
Rmet_6547
Putative sensory box protein/GGDEF family protein.
 
 
0.970
evgS
Hybrid sensory histidine kinase in two-component regulatory system.
 
 0.925
Rmet_1688
Hypothetical protein.
 
 
0.906
Rmet_0867
GGDEF family protein.
 
 
0.893
Rmet_0160
Methyl-accepting chemotaxis protein.
 
 
 0.866
Rmet_1689
Hypothetical protein.
 
 
0.816
Rmet_2245
Putative diguanylate cyclase.
 
 
0.807
Rmet_1693
Chemotaxis sensory transducer.
 
 
 0.791
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.