STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_2275Putative AAA ATPase protein. (771 aa)    
Predicted Functional Partners:
Rmet_3475
Putative ABC-type branched-chain amino acid transport system, periplasmic component.
  
     0.764
Rmet_0995
Putative transmembrane protein.
  
 
 0.692
phcB
Enzyme required for production of the extracellular factor (EF) 3-hydroxypalmitic acid methyl ester (3-OH PAME).
  
    0.670
phcR
Signal transduction histidine kinase containing a receiver domain (hybrid).
  
 0.661
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.631
Rmet_2637
Hemerythrin-like protein.
  
    0.630
pehS
Polygalacturonase histidine kinase regulator.
  
 0.619
Rmet_0185
Conserved hypothetical protein.
  
    0.616
phcS
Signal transduction histidine kinase.
  
    0.604
addB
ATP-dependent nuclease, subunit B.
 
     0.601
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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