STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alpADNA-binding transcriptional activator. (70 aa)    
Predicted Functional Partners:
soj
ATPase involved in plasmid partitioning Soj.
 
  
 0.915
Rmet_2292
Putative regulator.
 
    0.915
Rmet_2293
Putative regulator.
 
    0.907
Rmet_2294
Conserved hypothetical protein.
 
     0.905
virD4
VirD4, Type IV secretory pathway, VirD4 components.
 
  
 0.819
Rmet_2364
Relaxase.
 
  
 0.776
Rmet_2353
Type IV secretory pathway, VirB4 components.
 
    0.768
Rmet_2351
Conserved hypothetical protein.
  
    0.767
Rmet_2358
Putative membrane protein.
 
    0.765
Rmet_2352
Putative secreted protein.
  
    0.762
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.